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Report for Sequence Feature Glyma.04g247700

Feature Type:gene_model
Chromosome:Gm04
Start:51489118
stop:51495412
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g247700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69740.1AT Aldolase superfamily protein JGI N/AIEA
GO:0006779GO-bp porphyrin-containing compound biosynthetic process EnsemblGenomesN/AIEA
GO:0006782GO-bp protoporphyrinogen IX biosynthetic process EnsemblGenomesN/AIEA
GO:0006783GO-bp heme biosynthetic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process EnsemblGenomesN/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process EnsemblGenomesN/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004655GO-mf porphobilinogen synthase activity EnsemblGenomesN/AIEA
GO:0004655GO-mf porphobilinogen synthase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG2794 KOG Delta-aminolevulinic acid dehydratase JGI N/AIEA
PTHR11458Panther PORPHOBILINOGEN SYNTHASE JGI N/AIEA
PF00490PFAM Delta-aminolevulinic acid dehydratase JGI N/AIEA
PWY-5188SoyCyc9 tetrapyrrole biosynthesis I (from glutamate) Plant Metabolic Network ISS
PWY-5918SoyCyc9 superpathay of heme b biosynthesis from glutamate Plant Metabolic Network ISS
GN7V-53430SoyCyc9-rxn porphobilinogen synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g247700
LocusGene SymbolProtein Name
ALAD delta-aminolevulinic acid dehydratase, chloroplastic
HEMB aminolevulinate, delta-, dehydratase

Expression Patterns of Glyma.04g247700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g247700
ParalogEvidenceComments
Glyma.06g115000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g247700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g42670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g247700
>Glyma.04g247700.1 sequence-type=CDS polypeptide=Glyma.04g247700.1.p locus=Glyma.04g247700 ID=Glyma.04g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATGGCTTCTTCAATCCCTAATGCGCCTTCTGCGTTCAATTCTCAGAGCTACGTTGGTCTCAGAGCGCCACTGAGGACCTTCAACTTTTCTTCTCCTCAAGCTGCCAAAATTCCTCGCTCCCAACGCCTTTTCGTCGTCAGAGCCTCCGATTCGGAGTTCGAAGCCGCCGTTGTCGCCGGTAAGGTTCCGCCGGCGCCTCCCGTGCCGCCCAGACCGGCGGCTCCGGTTGGAACACCGGTGGTTCCTTCACTTCCACTTCACCGGCGTCCTCGTCGGAACCGGAAGTCGCCGGCGCTTCGGTCGGCTTTTCAGGAAACGAGCATTTCGCCGGCGAATTTCGTGTATCCGCTTTTCATTCACGAAGGTGAAGAGGATACTCCAATTGGGGCTATGCCTGGATGCTACAGGCTTGGGTGGAGGCATGGACTTGTAGAAGAGGTTGCAAAAGCACGGGATGTTGGTGTTAATAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGTCTCCCACAGGAGATGAAGCATACAATGAAAATGGTTTAGTGCCTCGAACAATACGTTTGCTCAAGGATAAGTACCCAGACCTTGTTATCTATACAGATGTTGCATTAGATCCTTATTCATCAGATGGGCATGATGGCATAGTTAGAGAAGATGGAGTTATTATGAATGATGAGACAGTTCATCAGCTATGTAAACAAGCTGTAGCCCAGGCCCAAGCTGGAGCAGATGTTGTCAGTCCTAGTGATATGATGGATGGTCGGGTAGGAGCACTGCGTGCAGCTCTGGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCCTATACAGCAAAGTATGCAAGTTCTTTTTATGGTCCATTTAGAGAGGCACTAGACTCAAACCCCCGGTTTGGAGACAAGAAAACTTATCAGATGAACCCAGCTAATTACAGAGAGGCTCTGACTGAGATGCGGGAGGATGAATCTGAAGGAGCTGACATTCTCTTGGTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAGACGAAGAAAAGGTTATGATGGAGTCACTGATGTGCCTCCGAAGGGCCGGTGCTGATATCATCCTCACATATTCTGCTCTGCAAGCTGCCAGATGTTTGTGTGGAGAGAAGAGGTGA
Predicted protein sequences of Glyma.04g247700
>Glyma.04g247700.1.p sequence-type=predicted peptide transcript=Glyma.04g247700.1 locus=Glyma.04g247700 ID=Glyma.04g247700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMASSIPNAPSAFNSQSYVGLRAPLRTFNFSSPQAAKIPRSQRLFVVRASDSEFEAAVVAGKVPPAPPVPPRPAAPVGTPVVPSLPLHRRPRRNRKSPALRSAFQETSISPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSVVLFPKIPDALKSPTGDEAYNENGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQAQAGADVVSPSDMMDGRVGALRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYAMIKAAGALKMIDEEKVMMESLMCLRRAGADIILTYSALQAARCLCGEKR*






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