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Report for Sequence Feature Glyma.04g083100

Feature Type:gene_model
Chromosome:Gm04
Start:7006088
stop:7009361
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g083100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67280.1AT Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein JGI N/AIEA
GO:0004462GO-mf lactoylglutathione lyase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2943 KOG Predicted glyoxalase JGI N/AIEA
PTHR10374Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI N/AIEA
PTHR10374:SF0Panther JGI N/AIEA
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI N/AIEA
PWY-5386SoyCyc9 methylglyoxal degradation I Plant Metabolic Network ISS
GN7V-61652SoyCyc9-rxn lactoylglutathione lyase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g083100
LocusGene SymbolProtein Name
GLYI-3 Glyoxylase 1 gene 3

Expression Patterns of Glyma.04g083100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g083100
ParalogEvidenceComments
Glyma.06g084500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g083100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g083100
>Glyma.04g083100.1 sequence-type=CDS polypeptide=Glyma.04g083100.1.p locus=Glyma.04g083100 ID=Glyma.04g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCATCATCCTTAATGTTACCAGCTGCTTCAATGCTGAGACCATGTACCACTTCATCATCATCATGTACTTCATCAAGAAGACTTGCTCTCTTTCACCTTGTCTCCACTGGTAGCATTGCTCTCCCACAAGCTCAGTTATTTGGTGCAAAAGGACCAGAGTTGTTAAGAGTAGTAGAGGCTTCTGCTGCAGAAAAACTAGCCCAACCAGAGAAAGATTTGTTTGACTGGGTCAAAAATGACAACAGAAGGTTTCTCCATGTTGTGTACCGTGTTGGAGACTTGGAGAAGACTATAAAGTTTTACACTGAATGCCTTGGCATGAAGCTATTGAGACAACGTGATATACCTGAAGACAGATATTCTAATGCTTTTCTTGGATATGGGCCTGAAGATTCCAATTTTACAGTTGAACTTACCTACAATTATGGAGTGGATAACTATGACATTGGAAGTGGCTTTGGTCATTTTGGTGTTGCAGTTGAAGATATTTACAAAAGAGTAGATCTAGTAAAGGCAAAAGGAGGAAAGGTTACAAGGGAACCCGGGCCTGTTAAAGATGGCAGTGCAGTTATTGCTTTCATTGAAGATCCTGATGGTTATAAGTTTGAACTTTTGGAGAGAAGACCTACATCTGAACCCCTATGCCAAGTGATGCTTCGAGTAGGTGATCTTGATCGTGCCATAGCCTTTTATGAAAAAGCTGTTGGAATGAAACTTCTCCGCAAGAGGGACAACCCCGAGCAGAAGTACACAGTAGCTTTTATGGGCTATGGTCCTGAAGACAAGAATACTGTTCTAGAACTGACATATAACTATGGTGTCACTAATTATGACAAAGGAAATGGTTATGCACAGATTGCCATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTATGTGGAGGGAAGATTATCCGTGAACCTGGGCCCTTGCCAGGTATCAACACCAAGATTGTAGCTTGCTTAGACCCTGATGGTTGGAAATTGGCATTTGTTGATAATGTTGATTTTCTGAAGGAATTAGAGTGA
Predicted protein sequences of Glyma.04g083100
>Glyma.04g083100.1.p sequence-type=predicted peptide transcript=Glyma.04g083100.1 locus=Glyma.04g083100 ID=Glyma.04g083100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSLMLPAASMLRPCTTSSSSCTSSRRLALFHLVSTGSIALPQAQLFGAKGPELLRVVEASAAEKLAQPEKDLFDWVKNDNRRFLHVVYRVGDLEKTIKFYTECLGMKLLRQRDIPEDRYSNAFLGYGPEDSNFTVELTYNYGVDNYDIGSGFGHFGVAVEDIYKRVDLVKAKGGKVTREPGPVKDGSAVIAFIEDPDGYKFELLERRPTSEPLCQVMLRVGDLDRAIAFYEKAVGMKLLRKRDNPEQKYTVAFMGYGPEDKNTVLELTYNYGVTNYDKGNGYAQIAIGTNDVYKTAEAIKLCGGKIIREPGPLPGINTKIVACLDPDGWKLAFVDNVDFLKELE*






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