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Report for Sequence Feature Glyma.04G200900

Feature Type:gene_model
Chromosome:Gm04
Start:47363745
stop:47372595
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04G200900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13980.1AT Glycosyl hydrolase family 38 protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006013GO-bp mannose metabolic process EnsemblGenomesN/AIEA
GO:0006013GO-bp mannose metabolic process JGI N/AIEA
GO:0006517GO-bp protein deglycosylation EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004559GO-mf alpha-mannosidase activity EnsemblGenomesN/AIEA
GO:0004559GO-mf alpha-mannosidase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0015923GO-mf mannosidase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG1959 KOG Glycosyl hydrolase, family 38 - alpha-mannosidase JGI N/AIEA
PTHR11607Panther ALPHA-MANNOSIDASE JGI N/AIEA
PTHR11607:SF3Panther LYSOSOMAL ALPHA-MANNOSIDASE JGI N/AIEA
PF01074PFAM Glycosyl hydrolases family 38 N-terminal domain JGI N/AIEA
PF07748PFAM Glycosyl hydrolases family 38 C-terminal domain JGI N/AIEA
PF09261PFAM Alpha mannosidase, middle domain JGI N/AIEA
GN7V-46668SoyCyc9-rxn α-mannosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.04G200900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04G200900
ParalogEvidenceComments
Glyma.06g164500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04G200900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g200900 Wm82.a4.v1ISS As supplied by JGI
Glyma04g37790 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04G200900
>Glyma.04g200900.1 sequence-type=CDS polypeptide=Glyma.04g200900.1.p locus=Glyma.04g200900 ID=Glyma.04g200900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAACACTGCTTTGTGTGTACTATGGTTTATACTACTCTTGTTGGGGTGTGTCATTTCCTCAGAATCTAAGTATATAAGGTACAACACAACATCGACCATTGTTCCTGGGAAACTCAACGTTCACTTGGTCCCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGGGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTACCTGCATTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAGCAGGCATTTTTCCAGCGATGGTGGAGGGAACAAAGTGATGCTGTCCAGAACATAGTCAAGGAACTGGTCAACACTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTACCCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTATCAAAGAAGAATTTGGAGTGACTCCGAGAATAGGGTGGCAGATTGATCCGTTTGGACATTCTGCTGTGCAGGCCTACTTGTTGGGGGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCTAAGAGAAAAGATGAAAAAACTCTTGAAGTTGTGTGGCGGGGCTCCAAGAGCCTTGGTTCATCAGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAACCTCCCAGTAATTTCTACTATGAAGTAAATGACGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTGGCAGCTGCAATATCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACCTGGTTTCGGCAATTGGACAAGTTTATTCACTATGTTAATCAAGATGGCCGTGTTCATGCCTTATACTCGACTCCATCAATATATACTGATGCAAAACATGCTGCCAATGAGGCCTGGCCAATAAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTACTGGACTGGGTATTTTACAAGCAGGCCAGCAATCAAAGGTTATGTCAGATTGATGAGTGGCTACTACTTGGCAGCGAGGCAGTTGGAATATTTTAAAGGGAAGAGTGCCTTAGGTCCCAACACTGACTCTTTGGCTGAAGCTTTGGCTATTGCTCAACACCATGACGCAGTATCTGGTACAGAAAAGCAGCATGTTGCTAATGATTATGCTAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCAGTATCACTTGCTTGCTTGACAGAGGGAGCAACCAAAACAGGTTGTAAGAACCCACAGACTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTCCTCAAATGGGAAAAACTTGGTAATTGTTGTTTACAATCCTCTAGGATGGAAAAGAGAGGATATCATAAGGATTCCTGTTGTCAATGAAAATGTTGTTCGGGATTCTAGTGGGAAAAAGATCCAATCCCAGCTGGTGCCGATACTTGATGATTTTCTTGGTTTAAGAAACTACCACACTGTGGCATACTTGGGAGTGTCTCCAACTGTAAAACCCAAATACTGGCTTGCTTTTTCAGCAGCTGTTCCTCCACTCGGTTTTAGCACTTACTATGTATCCTATGCCAAAAAAGAAGCTACTATTTCAGATAGAGATACAGCTTACCAATCATGGAATAAGAGTGATACAATTACAGTGGGCCTAAAAAACTTGAAACTAGTTTATTCTGTGAAGGAAGGGAAACTTACTAAATATATCAACAGCAGAAGCAAGGTCAAAGAACCTCTAGAGCAGGCATATAAATTTTACACTGGGTATGGAAATGATGGAACAGAAACTGCTCAGGCTTCTGGAGCATATATTTTTCGCCCTGATGGTTCACCTTCTCCCATCAAATCCAACGGGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAGTCCATGGATATACCAGACTACTAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAATTCATTGTTGGACCTATACCCATTGATGATGGAGATGGCAAAGAAATCGCAACTGAAATCAAAACAAATCTAGCAAGCAACAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGCACTTGGAAGTAAATCAACCTGTAGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGCAAAGAGTTTTCTATATTGGTAGATAGAGCTGTGGGGGGCTCCAGCATCATAGATGGGCAATTGGAGCTAATGGTTCATAGGAGGTTACTTCAGGATGATTCCCGAGGTGTTGCAGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGCACCGGGTTAACTGTGCTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCCAGATGGCGTCGATCATTTGGTCAGGAGATATACTCACCCTTGCTTTTAGCCTTCACAGAGAGTGAAGGTCACTGGGGAGATTCTCATGTCACAACCTTCTCAGGAATAGATTCCTCATACAACTTACCAGATAACGTTGCCATAGTAACTCTCCAGGATCTGGGTGATGGAAAAGTTCTCCTTCGGCTGGCACACTTATACGAGATTGACGAGGACAAGTATCTTTCGGTTAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCAACAAGCAGATAAACAAAATAACTGAAGTGAGCTTATCAGCAAACCAAGAAAGAGATGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCTCCAGAACCTAAGGTGTGGAGGGGAGGACCGGTAGATCCAGAAAATCTAATTGTAGAACTTGCTCCAATGGAAATAAGGACTTTTATTATCAGTTTTAGGCATTAA
Predicted protein sequences of Glyma.04G200900
>Glyma.04g200900.1.p sequence-type=predicted peptide transcript=Glyma.04g200900.1 locus=Glyma.04g200900 ID=Glyma.04g200900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENTALCVLWFILLLLGCVISSESKYIRYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWREQSDAVQNIVKELVNTGQLEFINGGFCMHDEAATHYIDMIDQTTLGHQFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSKSLGSSAQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPAIKGYVRLMSGYYLAARQLEYFKGKSALGPNTDSLAEALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAVSLACLTEGATKTGCKNPQTKFQQCPLLNISYCPASEVDSSNGKNLVIVVYNPLGWKREDIIRIPVVNENVVRDSSGKKIQSQLVPILDDFLGLRNYHTVAYLGVSPTVKPKYWLAFSAAVPPLGFSTYYVSYAKKEATISDRDTAYQSWNKSDTITVGLKNLKLVYSVKEGKLTKYINSRSKVKEPLEQAYKFYTGYGNDGTETAQASGAYIFRPDGSPSPIKSNGKSPLTVFRGPIVHEVHQKISPWIYQTTRLYKGKEHAEVEFIVGPIPIDDGDGKEIATEIKTNLASNKTFYTDSNGRDFIERVRDYRKDWHLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGSSIIDGQLELMVHRRLLQDDSRGVAEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPLLLAFTESEGHWGDSHVTTFSGIDSSYNLPDNVAIVTLQDLGDGKVLLRLAHLYEIDEDKYLSVKATVELKKVFPNKQINKITEVSLSANQERDEMERKRLVWQVKGSPPEPKVWRGGPVDPENLIVELAPMEIRTFIISFRH*






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