Glyma.02g171600

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Report for Sequence Feature Glyma.02g171600

Feature Type:	gene_model
Chromosome:	Gm02
Start:	26982395
stop:	26984739
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g171600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06720.1	AT	peroxidase 2	JGI	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	EnsemblGenomes	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	JGI	N/A	IEA
GO:0042744	GO-bp	hydrogen peroxide catabolic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0098869	GO-bp	cellular oxidant detoxification	EnsemblGenomes	N/A	IEA
GO:0005576	GO-cc	extracellular region	EnsemblGenomes	N/A	IEA
GO:0004601	GO-mf	peroxidase activity	EnsemblGenomes	N/A	IEA
GO:0004601	GO-mf	peroxidase activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PF00141	PFAM	Peroxidase	JGI	N/A	IEA
GN7V-40874	SoyCyc9-rxn	peroxidase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g171600

Locus	Gene Symbol	Protein Name
	POD	peroxidase

Expression Patterns of Glyma.02g171600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g171600

Paralog	Evidence	Comments
Glyma.09g109800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g171600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g28880	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.02g171600

Limit To All Plant Sequences

>Glyma.02g171600.1 sequence-type=CDS polypeptide=Glyma.02g171600.1.p locus=Glyma.02g171600 ID=Glyma.02g171600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTCTACTAATACTTATTCCCTTCCGACCACCATTTTCTTAGTGCTAACCTTTCTCTTCCCTTCAGAAGCTCAATTGAATGCAACCTTCTATTCTAGCACATGCCCCAATGTGTCTTCTATCGTGAGCAATGCTGTTCAGCAGGCTCTGCAATCTGATTCCCGAATTGGTGCAAGCCTCATTCGCCTCCACTTTCATGATTGTTTTGTCAATGGGTGTGATGCGTCCATATTGTTAGACCAGGGTGGTAACATCACACAAAGTGAGAAAAATGCAGTTCCTAACTTCAATTCCGTTCGGGGCTTTGATATTGTTGATAACATCAAGAGCTCCCTCGAAAGCTCTTGCCCTGGAGTCGTATCTTGTGCTGATATTCTTGCACTTGCAGCAGAATCTTCTGTGTCCTTGTCAGGAGGTCCTTCATGGAACGTACTACTCGGAAGAAGGGATGGTCTAACTGCAAACCAAGCTGGTGCCAATAGCTCCCTTCCTTCTCCATTTGAGAGCCTAGCCAATGTCTCATCCAAATTCTCTGCGGTTGGCCTAGACACAACCGATCTTGTTGCATTATCTGGTGCACACACTTTTGGTCGTTCCCAATGTCAATTTTTCTCCCAAAGGTTGTTCAACTTCAGCGGCACAGGAAGTCCTGATCCAACCCTAAACTCAACCTATTTGGCCACTCTGCAGCAAAATTGTCCCCAAAACGGAAATGGGTCTACATTGAACAATCTTGATCCTTCAACCCCTGACACTTTTGACAACAACTATTTCACCAATCTTCTCATCAACCAAGGTCTTCTTCAAACAGATCAAGAACTCTTCTCTACGAATGGCTCTTCCACAATCTCCATTGTTAACAACTTTGCCAACAACCAATCAGCCTTCTTCGCAGCATTTGCTCAGTCGATGATCAACATGGGTAACATCAGCCCTTTGACTGGAACTCAAGGAGAAATCAGAACAGATTGTAAGAAAGTGAATGGAAGTTAA

Predicted protein sequences of Glyma.02g171600

Limit To All Plant Sequences

>Glyma.02g171600.1.p sequence-type=predicted peptide transcript=Glyma.02g171600.1 locus=Glyma.02g171600 ID=Glyma.02g171600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSTNTYSLPTTIFLVLTFLFPSEAQLNATFYSSTCPNVSSIVSNAVQQALQSDSRIGASLIRLHFHDCFVNGCDASILLDQGGNITQSEKNAVPNFNSVRGFDIVDNIKSSLESSCPGVVSCADILALAAESSVSLSGGPSWNVLLGRRDGLTANQAGANSSLPSPFESLANVSSKFSAVGLDTTDLVALSGAHTFGRSQCQFFSQRLFNFSGTGSPDPTLNSTYLATLQQNCPQNGNGSTLNNLDPSTPDTFDNNYFTNLLINQGLLQTDQELFSTNGSSTISIVNNFANNQSAFFAAFAQSMINMGNISPLTGTQGEIRTDCKKVNGS*

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