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Report for Sequence Feature Glyma.01g014400

Feature Type:gene_model
Chromosome:Gm01
Start:1389107
stop:1393444
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g014400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G32220.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:1901006GO-bp ubiquinone-6 biosynthetic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0003954GO-mf NADH dehydrogenase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG4288 KOG Predicted oxidoreductase JGI N/AIEA
PTHR12126Panther NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED JGI N/AIEA
PTHR12126:SF2Panther DEHYDROGENASE-RELATED PROTEIN JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA

Expression Patterns of Glyma.01g014400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g014400
ParalogEvidenceComments
Glyma.09g207700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g014400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g01830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g014400
>Glyma.01g014400.2 sequence-type=transcript locus=Glyma.01g014400 ID=Glyma.01g014400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATAGCGTGGTGGATGGAAAGTCCAACTttcactcattcattcattcttcttcttcttctGGTGCTAAGTGCCTAAGCTCAAATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGCATCACCTGATCTTCAAATGATTGTTGAAATGGCTATTTAAAAACTATCAGAGCTAAAGTTCACTGAGGATCCGGCAACTGATTTTGTGGAAGATGAGTATCATGCTTTTGAAGGATATAAAGCTAACTAAATGGATAGGCCTTATTGTTTTTATTGAATTGCATTCTTGACAGTTCACTATGATCTTAACATCTTCAGGTATTGTCTTAAGACCTGCTTTCATATATGGCAAGAGGAGAGTGGATGGTTTTGAGCTTCCTTTGGATTTGGTAGGGGAGCCAGCAGAAAAAATTCTACGAGCAGTAGAGAACTTCACCAAACCTCTAAGCTCTCTTCCTGCATCTGATCTACTCTTGGCTCCACCTGTTAGTGTTGACGATGTTGCGTTGGCTGTTATCAATGGTGTCACAGATGATGACTTCTTTGGTATTTTTACAATTGACCAGATCAAGGAAGCTGCCAATAAAGTACGGGTATGAATATGATCCTCATATAGTGCTGCAATTTACAATAATTGTACAGGCAAGGAGAAACTACAATGAGGCCATTTTCCTCATGTTAATACCGGCAGCTTTTGGAGCACAATCTTTTTAAGGGAGTAGTGTGTGGGGAGAATGGTGTTAAAAACATATTGAATGTACTAAACGAGGTTCATATCTTTTTTTCGTTATACAAGTATTGTTAGTTTATGATTGGACCATTTTCGTGTCTGTAAGTTCTCAAACCAGTGACTTAATTAGAGGCCAATAGTTAGATTTGTAAATACAAACTGCAGTGTTAGTATCTATTTCGTTTTGCATGCTGC
Coding sequences of Glyma.01g014400
>Glyma.01g014400.1 sequence-type=CDS polypeptide=Glyma.01g014400.1.p locus=Glyma.01g014400 ID=Glyma.01g014400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGGTATTGTCTTAAGACCTGCTTTCATATATGGCAAGAGGAGAGTGGATGGTTTTGAGCTTCCTTTGGATTTGGTAGGGGAGCCAGCAGAAAAAATTCTACGAGCAGTAGAGAACTTCACCAAACCTCTAAGCTCTCTTCCTGCATCTGATCTACTCTTGGCTCCACCTGTTAGTGTTGACGATGTTGCGTTGGCTGTTATCAATGGTGTCACAGATGATGACTTCTTTGGTATTTTTACAATTGACCAGATCAAGGAAGCTGCCAATAAAGTACGGGTATGA

>Glyma.01g014400.2 sequence-type=CDS polypeptide=Glyma.01g014400.2.p locus=Glyma.01g014400 ID=Glyma.01g014400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGTTTTTGTCTTTTCTCCCTGCCGTTTCCGCTCGTCCCATTCCCACCAGCGCCTTCTCTCCCAAAAGACCTCTCTTTCAAACTCCACCCACCTTGCATTTCAAAAATCACCGGTTTGCAGTTAGTTGCAGTTATGCAGAAGCAGGTGTCTATGCTAATTCTAGCTCTAACACCATAGATGTTGTGGCTGATGTTAGAAGTGAGCGGATTGTAGTCTTAGGAGGGAATGGCTTTGTTGGTTCTTCCATATGCAAGGCAGCAGTGTCCAAGGGCATAGAAGTCATAAGCCTAAGCAGGTCAGGGAGACCTACTTACTCAGGTGCATGGGTAGATCAAGTTACTTGGATTTCAGGAGATGTTTTTTATGTAAACTGGGATGAAGTACTTGTTGGAGCTACTGCAGTTGTTTCAACACTTGGAGGTTTTGGTAGTGAGGAACAGATGAAAAGAATTAATGGGGAGGCTAATGTTGTGGCTGTGAATGCTGCAAAAGAATATGGAATTCCCAAATTCATCCTGATCTCAGTTCATGATTATAATTTACCATCATTTTTACTTTCATCTGGGTACTTTACGGGAAAGAGGAAAGCAGAATCCGAGGTTCTCTCCAAATACCCCAATTCAGCATCACCTGATCTTCAAATGATTGTTGAAATGGCTATTTAA
Predicted protein sequences of Glyma.01g014400
>Glyma.01g014400.1.p sequence-type=predicted peptide transcript=Glyma.01g014400.1 locus=Glyma.01g014400 ID=Glyma.01g014400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFLSFLPAVSARPIPTSAFSPKRPLFQTPPTLHFKNHRFAVSCSYAEAGVYANSSSNTIDVVADVRSERIVVLGGNGFVGSSICKAAVSKGIEVISLSRSGRPTYSGAWVDQVTWISGDVFYVNWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSGIVLRPAFIYGKRRVDGFELPLDLVGEPAEKILRAVENFTKPLSSLPASDLLLAPPVSVDDVALAVINGVTDDDFFGIFTIDQIKEAANKVRV*

>Glyma.01g014400.2.p sequence-type=predicted peptide transcript=Glyma.01g014400.2 locus=Glyma.01g014400 ID=Glyma.01g014400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFLSFLPAVSARPIPTSAFSPKRPLFQTPPTLHFKNHRFAVSCSYAEAGVYANSSSNTIDVVADVRSERIVVLGGNGFVGSSICKAAVSKGIEVISLSRSGRPTYSGAWVDQVTWISGDVFYVNWDEVLVGATAVVSTLGGFGSEEQMKRINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFLLSSGYFTGKRKAESEVLSKYPNSASPDLQMIVEMAI*






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