Report for Sequence Feature Glyma17g05270
Feature Type: gene_model
Chromosome: Gm17
Start: 3623667
stop: 3625594
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05270
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G44860 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159
SoyBase E_val: 3.00E-81 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0042254 GO-bp
Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0022625 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG1723
KOG
60s ribosomal protein L30 isolog
JGI ISS
PTHR10792 Panther
60S RIBOSOMAL PROTEIN L24
JGI ISS
PTHR10792:SF3 Panther
gb def: Putative ribosomal protein L30 (Fragment)
JGI ISS
PF01246 PFAM
Ribosomal protein L24e
JGI ISS
UniRef100_B7FMU0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein rlp24 n=1 Tax=Medicago truncatula RepID=B7FMU0_MEDTR
SoyBase E_val: 4.00E-86 ISS
UniRef100_I1MS60 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS60_SOYBN
SoyBase E_val: 1.00E-120 ISS
Expression Patterns of Glyma17g05270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g05270
Paralog Evidence Comments
Glyma12g30680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05270 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g318800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05270
Coding sequences of Glyma17g05270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05270.1 sequence type=CDS gene model=Glyma17g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGATTGGAGAAATGCTGGTTTTGCTCTTCAACCGTATACCCCGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCAAAATGCCACAAGAACTTTAAAATGAAGAGAAATCCTCGTAAGGTAAAGTGGACCAAGGCATATCGTCGAGTGCATGGAAAGGATATGACTCAGGACTCAACCTTTGAGTTTGAGAGAAAACGAAACAGGCCTGAAAGATATGACAGGAATCTTGCGGAGAATGTCCTGAAGGCCATTCCTAAGATTGATAAAATCAGAGTCACCAGGGAGGAGAGACACCATAAGAACAGGATGAAAGGAAAAAAGGAAAAGCTGCTGAAGGAGGCAGTGAAGGAGTTGGAGCAGGGCATCAGTTTGGTCAAAGCTCCTTCTGTGCTTCAACAGGATCCATCTCTCACATTACCAAAGATCAAAGTCAAGGTTTCCCAACAGCAATCAGAGGAGAATCATGCCATGGAAGAGTAA
Predicted protein sequences of Glyma17g05270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05270.1 sequence type=predicted peptide gene model=Glyma17g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLLKEAVKELEQGISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENHAMEE*