Glyma09g06170 - SoyBase

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Report for Sequence Feature Glyma09g06170

Feature Type:	gene_model
Chromosome:	Gm09
Start:	4918664
stop:	4926453
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Expression Patterns of Glyma09g06170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

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Gene model name correspondences to Glyma09g06170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g06166	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)
Glyma09g06173	Wm82.a1.v1.1	IGC	Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma09g06170

Jegadeesan et al. 2010
Mapping and validation of simple sequence repeat markers linked to a major gene controlling seed cadmium accumulation in soybean [Glycine max (L.) Merr]
Theor. Appl. Genet. 2010, 121:283-294

Benitez et al. 2010
A Major QTL Controlling Seed Cadmium Accumulation in Soybean
Crop Sci. 2010 50:1728-1734

Benitez et al. 2012
Single-Base Substitution in P1B-ATPase Gene Is Associated with a Major QTL for Seed Cadmium Concentration in Soybean
J Hered 2012 103: 278-286

Comments about the feature

This gene model has been identified by Benitez et al. (2012) as being involved in seed cadmium accumulation. Based on sequence similarity it has been annotated as a P1B-ATPase. Benitez et al. (2010) mapped a seed cadmium concentration QTL (Sd cadmium 1-1) to this region. Jegadeesan et al. (2010) used genetic segregation to map a gene (Cda1) to this region.

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