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Report for Sequence Feature Glyma01g37870

Feature Type:gene_model
Chromosome:Gm01
Start:50146984
stop:50150059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g37870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18250AT Annotation by Michelle Graham. TAIR10: 4-phosphopantetheine adenylyltransferase | chr2:7940025-7941499 FORWARD LENGTH=176 SoyBaseE_val: 6.00E-84ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0015937GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0080020GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of coenzyme A biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004140GO-mf Annotation by Michelle Graham. GO Molecular Function: dephospho-CoA kinase activity SoyBaseN/AISS
GO:0004595GO-mf Annotation by Michelle Graham. GO Molecular Function: pantetheine-phosphate adenylyltransferase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016779GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity SoyBaseN/AISS
PTHR24702Panther FAMILY NOT NAMED JGI ISS
PF01467PFAM Cytidylyltransferase JGI ISS
UniRef100_G7KEY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantetheine adenylyltransferase n=1 Tax=Medicago truncatula RepID=G7KEY2_MEDTR SoyBaseE_val: 2.00E-104ISS
UniRef100_I1J8T5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8T5_SOYBN SoyBaseE_val: 9.00E-128ISS

Expression Patterns of Glyma01g37870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g37870 not represented in the dataset
Glyma01g37870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g37870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma01g37870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g37870
>Glyma01g37870.2   sequence type=transcript   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATAATGCCAAAGCTTGAAACTTGTGTGCAGGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAGTTACAGACAATTTGTTTAACTTTTTTCTTTCAAAATATTTCTTCAAAGATGAGTTTAAGGTGTCCATTAAAGCAACTGACATGTGAGTGCATGTTACCATGTTATGACATTGTTTAAGTTTAAAAGGTGGAAGTCACATTCTTTAGGAAAAATATTGTAAAGATGTATCGTTTTTTTTTCAACGCACCAAACAAAAAACATTATTAGTTTGTTTAGAGGAATGTGTTGTATTTATATTTATATTTTCTCTAATAGAAATAAGTATTTTATTCTAAACA

>Glyma01g37870.3   sequence type=transcript   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAACGAACCATTGGTTCAATATATATAACAACGAATCCGATCCTCTTTTCATCTCACACCTACTGCCACCAGTGAAAGTCATTCCTGCACATCGAATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGGTCTCAATTTATTGTTTGTGTAGTTTGGTTATAATTTCTGACATAAAAGTTAAGAAAATATTATCAAAATATTTTGTCAGATATTAGAAATTATTTTCTTGGATCTTATGCAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAGTTACAGACAATTTGTTTAACTTTTTTCTTTCAAAATATTTCTTCAAAGATGAGTTTAAGGTGTCCATTAAAGCAACTGACATGTGAGTGCATGTTACCATGTTATGACATTGTTTAAGTTTAAAAGGTGGAAGTCACATTCTTTAGGAAAAATATTGTAAAGATGTATCGTTTTTTTTTCAACGCACCAAACAAAAAACATTATTAGTTTGTTTAGAGGAATGTGTTGTATTTATATTTATATTTTCTCTAATAGAAATAAGTATTTTATTCTAAACA
Coding sequences of Glyma01g37870
>Glyma01g37870.1   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAG

>Glyma01g37870.2   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGCTTGAAACTTGTGTGCAGGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAG

>Glyma01g37870.3   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGGTCTCAATTTATTGTTTGTGTAGTTTGGTTATAATTTCTGACATAAAAGTTAAGAAAATATTATCAAAATATTTTGTCAGATATTAG
Predicted protein sequences of Glyma01g37870
>Glyma01g37870.1   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGDDDTMVMVVPKLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESGEIKLSSSMLRKIEAERAKQQNTIPQT*

>Glyma01g37870.2   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKLETCVQASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESGEIKLSSSMLRKIEAERAKQQNTIPQT*

>Glyma01g37870.3   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGDDDTMVMVVPKLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKVSIYCLCSLVIISDIKVKKILSKYFVRY*






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