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Report for Sequence Feature Glyma01g37870

This Glyma 1.1 gene model is not represented in the 2nd genome assembly and is only shown in relation to the 1.0 assembly in GBrowse


Feature Type:gene_model
Chromosome:Gm01
Start:50146984
stop:50150059
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



This gene model is present only in the previous Wm82.a1 assembly, annotation version 1.1 set. .


Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18250AT Annotation by Michelle Graham. TAIR10: 4-phosphopantetheine adenylyltransferase | chr2:7940025-7941499 FORWARD LENGTH=176 SoyBaseE_val: 6.00E-84ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0015937GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0080020GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of coenzyme A biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004140GO-mf Annotation by Michelle Graham. GO Molecular Function: dephospho-CoA kinase activity SoyBaseN/AISS
GO:0004595GO-mf Annotation by Michelle Graham. GO Molecular Function: pantetheine-phosphate adenylyltransferase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016779GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity SoyBaseN/AISS
PTHR24702Panther FAMILY NOT NAMED JGI ISS
PF01467PFAM Cytidylyltransferase JGI ISS
UniRef100_G7KEY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantetheine adenylyltransferase n=1 Tax=Medicago truncatula RepID=G7KEY2_MEDTR SoyBaseE_val: 2.00E-104ISS
UniRef100_I1J8T5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J8T5_SOYBN SoyBaseE_val: 9.00E-128ISS


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozom1e are displayed using the PhyloTree viewer developed by LIS.


Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183


Annotation data from JGI Version Wm82.a1.v1.1
FeatureFeature NameChromosomeStartStop
GENEGlyma01g37870 Gm015014698450150059
mRNAGlyma01g37870.1  5014698450150059
mRNAGlyma01g37870.2  5014728850150059
mRNAGlyma01g37870.3  5014698450150059

>Glyma01g37870.1   sequence type=primary transcript   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAACGAACCATTGGTTCAATATATATAACAACGAATCCGATCCTCTTTTCATCTCACACCTACTGCCACCAGTGAAAGTCATTCCTGCACATCGAATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAGTTACAGACAATTTGTTTAACTTTTTTCTTTCAAAATATTTCTTCAAAGATGAGTTTAAGGTGTCCATTAAAGCAACTGACATGTGAGTGCATGTTACCATGTTATGACATTGTTTAAGTTTAAAAGGTGGAAGTCACATTCTTTAGGAAAAATATTGTAAAGATGTATCGTTTTTTTTTCAACGCACCAAACAAAAAACATTATTAGTTTGTTTAGAGGAATGTGTTGTATTTATATTTATATTTTCTCTAATAGAAATAAGTATTTTATTCTAAACA

>Glyma01g37870.1   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAG

>Glyma01g37870.2   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAGCTTGAAACTTGTGTGCAGGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATACCGCAGACTTAG

>Glyma01g37870.3   sequence type=CDS   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGGTCTCAATTTATTGTTTGTGTAGTTTGGTTATAATTTCTGACATAAAAGTTAAGAAAATATTATCAAAATATTTTGTCAGATATTAG

>Glyma01g37870.1   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGDDDTMVMVVPKLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESGEIKLSSSMLRKIEAERAKQQNTIPQT*

>Glyma01g37870.2   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKLETCVQASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESGEIKLSSSMLRKIEAERAKQQNTIPQT*

>Glyma01g37870.3   sequence type=predicted peptide   gene model=Glyma01g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGDDDTMVMVVPKLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKVSIYCLCSLVIISDIKVKKILSKYFVRY*







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