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GWAS Report for Seed coat color 5
Experimental Details
Number of germplasm analyzed | 276 |
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Number of loci tested | 9083 |
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Platform name | GBS |
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Publication for This Experiment
Identification of genetic loci conferring seed coat color based on a high-density map in soybean
(Yuan et al. 2022)
Yuan et al. 2022 Front. Plant Sci. 13:968618
0.3389/fpls.2022.968618
Controlled vocabulary terms associated with the QTL Family
Comments
Bin Markers used
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | LOD | Chromosome | Linkage Group |
Seed coat color 5-g1 | qSC08 | 14.251 | Gm08 | D1b |
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Only range given |
Seed coat color 5-g2 | qSC11 | 8.112 | Gm11 | F |
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Only range given |
Click Here to View Full List of GWAS QTL