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GWAS Report for Sclero 4
Experimental Details
Number of germplasm analyzed | 330 |
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Number of loci tested | 148,094 |
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Platform name | SLAF-seq |
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Platform details | specific locus amplified fragment sequencing |
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Publication for This Experiment
Loci and candidate gene identification for resistance to Sclerotinia sclerotiorum in soybean (Glycine max L. Merr.) via association and linkage maps
(Zhao et al. 2015a)
The Plant Journal 2015, 82:245255
10.1111/tpj.12810
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | R2 | Chromosome | Linkage Group |
Sclero 4-g1 | Soybean white mold | RS:2707217 | 7.39 | Gm06 | C2 |
Sclero 4-g2 | Soybean white mold | RS:1592904 | 8.37 | Gm10 | O |
Sclero 4-g3 | Soybean white mold | RS:1808219 | 7.28 | Gm11 | B1 |
Sclero 4-g4 | Soybean white mold | RS:3296576 | 23.62 | Gm13 | F |
Sclero 4-g5 | Soybean white mold | RS:3296245 | 22.56 | Gm13 | F |
Sclero 4-g6 | Soybean white mold | RS:4244040 | 18.76 | Gm13 | F |
Sclero 4-g7 | Soybean white mold | RS:3446126 | 17.20 | Gm13 | F |
Click Here to View Full List of GWAS QTL