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GWAS Report for Pod shattering 2
Experimental Details
Number of loci tested | 2321 |
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Platform name | SoyaSNP 180K |
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Platform details | Axiom 180K SoyaSNP chip |
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Publication for This Experiment
QTL Mapping and Candidate Gene Analysis for Pod Shattering Tolerance in Soybean (Glycine max)
(Seo et al. 2020)
Seo et al. 2020 Plants 9(9):1163
10.3390/plants9091163
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | LOD | Chromosome | Linkage Group |
Pod shattering 2-g1 | qPS-DT02 | 6 | Gm02 | D1a |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g2 | qPS-DT06 | 3.6 | Gm06 | C2 |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g3 | qPS-DT11 | 17.4 | Gm11 | B1 |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g4 | qPS-DT13 | 4.3 | Gm13 | F |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g5 | qPS-DT14 | 33.4 | Gm14 | B2 |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g6 | qPS-DT16-2 | 13.4 | Gm16 | J |
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Only range reported, Daewonkong x Tawonkong population reported |
Pod shattering 2-g7 | qPS-DT20 | 3.7 | Gm20 | I |
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Only range reported, Daewonkong x Tawonkong population reported |
Click Here to View Full List of GWAS QTL