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Report for Sequence Feature Glyma.12g051100

Feature Type:gene_model
Chromosome:Gm12
Start:3678681
stop:3683056
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06110.1AT SKP1/ASK-interacting protein 16 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG4408 KOG Putative Mg2+ and Co2+ transporter CorD JGI N/AIEA
PTHR14289Panther F-BOX ONLY PROTEIN 3 JGI N/AIEA
PTHR14289:SF10Panther JGI N/AIEA
PF04379PFAM Protein of unknown function (DUF525) JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.12g051100 not represented in the dataset

Glyma.12g051100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at SoyMine

Gene information in SoyMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.11g126500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma12g05510 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.12g051100.1 sequence-type=CDS polypeptide=Glyma.12g051100.1.p locus=Glyma.12g051100 ID=Glyma.12g051100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGGAATCGGTGGGAGATTTAGCGATTAACGTGATTCTGAAAAAATTAGGAGCCCAAGACATTGCGAGAGTGGCGTGTGTGAGCAAAAGGTTCAGTTCTTCCGCTTCCGATGACACTCTTTGGATCAATCTCTGCTTCAATGAACTCGCTTTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCTAGCATGGAGAGGAGCTTTTGTTATGTACCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAGAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCGGAGGCCACTCTTTGTAAAGGTGCAACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCTCTTCCTACAAGGATCCTTTATCGCTTTCACAATGGGCAAGAATTTGCAAAGGCAGATCCAGAAACTAGTACATTTGGCAGATCTTTGGGTCTAATTGGTGGCTACTCCTTCTATGGTCATTTGGTGAATGTTTATCTATTACCTATATGTCAGATAATCCTAGAAACTCAGCAAACTAGGCGTCGCTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTTGTGGCTGCTTCATCCACATACAGTAGAAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTCGGGACCAGGTCTCCTCTTACCGAAAGAGACATAATCCCTTGTGTACCTCATGACCTGATTAGTTTACATCAGGAATTGAATAGTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACACGGCTTTATCAAACTTCATGATGAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCATATTTGTTCAACGGCTGTTACTAATGGTGTGAAGGTTCGCGCTTCTGCACTGGTTATCCCTGAGTTGATGGATCTTCAAGATGACCTTGGAGAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGATGCATTATTAATGGAATGTCCTTCAGCTCTTGCCAGCTCCATTGGAGGCACTGGATCATCCGTGCTAATGATATTGTTATATCTGATGTCAGTGGAAAAGCTGTTATAGGACAGTTTCCACTTTTGCGTCCGGGTGCTCAAGAATTTGTTTATCAGAGTTGCACGCCTCTACCAACACCATCAGGTTCTATTGAAGGTTCTTTTACATTTATACCCGGCAGATTGGCAGACCCAAAAGGAGACCCTTTTCTAGCTACAGTGGCTCGTTTCCCGCTCCAGCTGCCAGACTATATATTCTGA

>Glyma.12g051100.1.p sequence-type=predicted peptide transcript=Glyma.12g051100.1 locus=Glyma.12g051100 ID=Glyma.12g051100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLESVGDLAINVILKKLGAQDIARVACVSKRFSSSASDDTLWINLCFNELALTQPLDHLGNPLSSFKECYLAWRGAFVMYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPTRILYRFHNGQEFAKADPETSTFGRSLGLIGGYSFYGHLVNVYLLPICQIILETQQTRRRLSFLRRSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRSPLTERDIIPCVPHDLISLHQELNSSEQQDAMLLWLEEHGRRLEHGFIKLHDEGNGKSINLFPEEPHICSTAVTNGVKVRASALVIPELMDLQDDLGEYLFAYSIRLSLEPQGCIINGMSFSSCQLHWRHWIIRANDIVISDVSGKAVIGQFPLLRPGAQEFVYQSCTPLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF*







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