Resources for "ESTminer: A suite of programs for gene and allele identification"

Nelson, Grant and Shoemaker
accepted to BioInformatics (2004)

Figures

    Figure 1A. Cap3 assembly of ESTs from an inbred genome
    Figure 1B. Assembly of all ESTs related to the Cap3 contig sequences
    Figure 1C. Identification of sequence differences among gene family members
    Figure 1D. Data reduction and potential haplotype identification
    Figure 1E. Allele identification in other genotypes
    Figure 2. Potential haplotype assembly ambiguities
    Figure 3. Example of SNPFind output
    Figure 4. Example of AlleleFinder output

Programs

Click on ESTminer's name to download a compressed file containing all the PERL source code. The zip file contains a subdirectory for all of the program files and associated input and output files. Please read the README file for detailed instructions on how to use the ESTminer programs and format the input files.
    ESTminerV0.3