---
identifier: Wm82.gnm2.div.Zhang_Jiang_2020

provenance: "SoyBase.org is the primary repository for files in this directory. Data in this directory derives from the Dr. Yong-Qiang (Charles) An's laboratory at USDA-ARS, St. Louis, MO. Files here are held as part of the SoyBase and LegumeInfo projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers. If you use the data in the present directory, please cite the data appropriately - generally referring to the original publications for this data."

source: https://soybase.org/data/public/Glycine_max/Wm82.gnm2.div.Zhang_Jiang_2020

synopsis: "Variant information for 1,556 resequenced soybean accessions Glycine max and Glycine soja, provided by Yong-Qiang An and Rick Meyer (Zhang et al., 2022), relative to Wm82 assembly 2." 

scientific_name: Glycine max

taxid: 3847

scientific_name_abbrev: glyma

genotype:
  - 1556 cultivated and wild soybean accessions

description: "Genetic variant data derived from whole genome resequencing data of 1,502 diverse accessions from G. max and G. soja. The datasets were generated as part of a project funded by the United Soybean Board, USDA-ARS and Bayer Company. Data sets include a full set of 32 million SNPs, and subsets filtered at minor allele frequencies of 1% and 5%. The pre-released datasets have not been fully peer-reviewed."

original_file_creation_date: "2020-08-13"

local_file_creation_date: "2021-10-27"

publication_doi: 10.1186/s12864-022-08326-w

dataset_release_date: "2021-10-28"

publication_title: "Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes"

contributors: Rick Meyer, Yong-Qiang An  

data_curators: Anne V. Brown, Steven Cannon

public_access_level: public

license: open

keywords: soybean, diversity, SNP

citation: "Zhang H, Jiang H, Hu Z, Song Q, An YC. Development of a versatile resource for post-genomic research through consolidating and characterizing 1500 diverse wild and cultivated soybean genomes. BMC Genomics. 2022 Mar 31;23(1):250. doi: 10.1186/s12864-022-08326-w. PMID: 35361112; PMCID: PMC8973893."