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GWAS Report for Soybean mosaic virus 2

Experimental Details

Number of germplasm analyzed	165
Number of loci tested	282,469
Platform name	NJAU 355 K SoySNP assay

Publication for This Experiment

Genome-Wide Association Study Reveals Novel Loci for SC7 Resistance in a Soybean Mutant Panel
(Che et al. 2017a)

Front. Plant Sci. 2017, 8:1771
10.3389/fpls.2017.01771

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001501
GO	GO:0009615
TO	TO:0000148

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	p-value	Chromosome	Linkage Group
Soybean mosaic virus 2-g1	SMV	Gm01:4682207	4.83E-06	Gm01	D1a
Soybean mosaic virus 2-g2	SMV	Gm03:33827665	2.18E-06	Gm03	N
Soybean mosaic virus 2-g3	SMV	ss715590497	1.32E-06	Gm05	A1
Soybean mosaic virus 2-g4	SMV	Gm09:6460624	8.22E-06	Gm09	K
Soybean mosaic virus 2-g5	SMV	Gm09:40333374	1.3E-05	Gm09	K
Soybean mosaic virus 2-g6	SMV	ss715607161	8.43E-06	Gm10	O
Soybean mosaic virus 2-g7	SMV	Gm12:4445218	7.8E-06	Gm12	H
Soybean mosaic virus 2-g8	SMV	Gm12:16672230	1.35E-06	Gm12	H
Soybean mosaic virus 2-g9	SMV	Gm12:24199499	7.8E-06	Gm12	H
Soybean mosaic virus 2-g10	SMV	Gm12:40009097	7.6E-06	Gm12	H
Soybean mosaic virus 2-g11	SMV	ss715613841	1.11E-05	Gm13	F
Soybean mosaic virus 2-g12	SMV	Gm15:18814176	1.41E-05	Gm15	E

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Click Here to View Full List of GWAS QTL