Bean Picture
SoyBase and the Soybean Breeder's Toolbox
Integrating Genetics and Molecular Biology for Soybean Researchers
SoyBase.org Maps Genome Analysis Tools Resources SoySeq


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Examples: Gm02, Gm20:43000001..44000000, Satt320, TC237078, iron.
  
Data Source
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- Overview
centromere (approx)
pericentromere (approx)
- Region
- Details
Ruler
Gene models (zoom <= 2 Mbp for detail)
published genes
recent duplication blocks (soy-soy 13 Mya)
soybean (map version 4.0)
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- Tracks
-  General soybean features
   
assembly supercontigs centromere (approx) [?] pericentromere (approx) [?]
-  Genes
   
Exon density [?] Gene models (zoom <= 2 Mbp for detail) [?] 
Gene models (transposon-like) [?] published genes [?] 
-  Genome structure
   
old duplication blocks (soy-soy 58 Mya) [?] synteny blocks (with Cajanus) [?] 
recent duplication blocks (soy-soy 13 Mya) [?] synteny blocks (with Medicago) [?] 
-  Mutants
   
fast neutron [?]  
- BAC clones
   
  Wm82 FPC contigs [?]   Wm82 BACs (zoom <= 2 Mbp) [?]  Phaseolus vulgaris (common bean) [?]
  soybean (minimum tiling path) [?]   Wm82 sequenced BACs [?] 
- Expressed Sequence Tags
- Dana Farber Cancer Institute
   
Glycine max (soybean) (zoom <= 2 Mbp) [?] Lotus japonicus (birdsfoot trefoil) [?] Medicago truncatula (barrel medic) [?]
- JCVI
   
Arachis hypogaea (peanut) [?] Lotus japonicus (birdsfoot trefoil) [?] Pisum sativum (pea) [?]
Arachis stenosperma (wild peanut) [?] Lupinus albus (white lupin) [?] Vigna unguiculata (cowpea) [?]
Glycine max (soybean) [?] Phaseolus coccineus (runnerbean) [?] 
Glycine soja (soybean relative) [?] Phaseolus vulgaris (common bean) [?] 
- Various sources
   
Cajanus cajan (pigeonpea) v.1 [Varshney et al.] [?] Cajanus cajan (pigeonpea) v.2 [Varshney et al.] [?] Chamaecrista fasciculata - clean [Singer et al. 2010] [?]
Cajanus cajan (pigeonpea) v.1 primers [Varshney et al.] [?] Cajanus cajan (pigeonpea) v.2 primers [Varshney et al.] [?] Phaseolus vulgaris [Phil McClean] [?]
- Expression - microarray
   
Affy SoyChip1 [?]  
- Markers
   
Phaseolus vulgaris (common bean) [?] soybean (map version 3.0) [?] Wm82_potential_SSR [?]
Conserved Orthologous Sequence [Doug Cook] [?] soybean (map version 4.0) [?] 
Pigeonpea SSR markers [?] Wm82 x PI468916 [?] 
- RNA-Seq
- Illumina
- FeVance_idc 2011
   
alignments [showing 8/8 subtracks]  
- Seed development [Bolon, Joseph et al. 2010]
   
transcript count by tissue (slow; recommend zoom <= 2 Mbp) [?] transcript density [?] [showing 8/8 subtracks] 
- Soy atlas [Severin et al. 2010]
   
transcript density [?] [showing 14/14 subtracks]  
- Repetitive sequence
   
TE1 LTR V2 (all) [?] TE1 LTR V2 (LTR) [?] telomeric repeats [?]
TE1 LTR V2 (Helitron_ukn) [?] TE1 LTR V2 (TIR) [?] 
TE1 LTR V2 (LINE_ukn) [?] TE1 LTR V2 density (all) [?] 
- Overview
   
centromere (approx) [?] pericentromere (approx) [?] 

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