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SoyBase and the Soybean Breeder's Toolbox
Integrating Genetics and Molecular Biology for Soybean Researchers |
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| Data are available for the Composite Genetic Map or the Consensus Genetic Map | ||
| First choose the Linkage Group. Then choose a genetic map feature type. | ||
| Enter the range of interest in cM. Use a range of 0-9999 to retrieve all features for a linkage group. | ||
| cM | ||
| cM | ||
| The "Retrieve All" button will collect all information for all linkage groups in the chosen map set. | ||
Use this tool to retrieve the sequence coordinates for a list of soybean gene calls. A table containing the chromosome and the beginning and end positions (in bp on the chromsome) for each gene call will be returned along with and a text file that you can download to your computer frome the "Download Results" button.
First upload a file of gene call names as seen on the genome sequence.
Use this tool to retrieve the sequence coordinates for all of the markers or gene calls on a single chromosome or for the whole genome. Currently only gene calls or molecular markers are available. A table containing the chromosome and the beginning and end positions (in bp on the chromosome) will be returned.
First choose the chromosome you are interested in. Then choose the type of feature you want to retrieve. The result of the search will be a text file that can be downloaded when the "Download Results" button appears.
Use this tool to submit a list of one or more gene models. A table containing the chromosome and the beginning and end positions (in bp on the chromosome) will be returned.
First upload a file of gene calls as seen on the genome sequence. Then shoose the sequence type desired. The result of the search will be a text file avaliable for download to your computer.
The "Retrieve All" button will retrieve the gene call sequences for all chromosomes. (Please select a Sequence Type first).
This tool accepts a list of Wm82 gene model names (eg. Glyma12g10780) and returns the 5' and/or 3' flanking sequence.
This tool accepts a list of Wm82 gene model names (eg. Glyma12g10780) and returns the sequences of the 5' and 3' UTRs of all mRNAs for that gene.
