Affymetrix SoyChip Probe Information Page

SoyBase and the Soybean Breeder's Toolbox
Integrating Genetics and Molecular Biology for Soybean Researchers

Welcome to the SoyBase Affymetrix &trade GeneChip ® Soybean Genome Array Probe Analysis Page

This page is designed to search for unigene sequences that have Affymetrix &trade GeneChip ® Soybean Genome Array probe sets exact matches. Each probe 25 mer was associated with a sequence when there was a perfect match between the probe and the sequence. To search for matches to a probe set, enter a list of the consensus sequences in which you are interested. You will then be presented with a five column table that represents the Affymetrix contig, probe set and the list of sequences from each unigene set matching one or more of the 25 mers that make up the 11 member set for each Affymetrix consensus sequence.

Enter a list of Affymetrix contig IDs here:

Download all Glycine max probe-hit information for the chip as a tab-delimited file suitable for import into a spreadsheet

This information is for the Affy consensus sequences derived from G. max sequences. This does not include sequences from G. soja, soybean cyst nematode, or Phytophthora sojae

Welcome to the SoyBase Affymetrix &trade GeneChip ® Soybean Genome Array Probe Analysis Page

Enter a list of Affymetrix contig IDs here:

Choose Output Type:

Choose unigene set:

Download all Glycine max probe-hit information for the chip as a tab-delimited file suitable for import into a spreadsheet