SoyBase Soybean Sequence Map Resources
SoyBase browser
SoyBase soybean browser: genomic sequence, markers, physical map, ...
View the JGI Gma1.01 WGS soybean genomic sequence, as pseudomolecules,
integrating features from the soybean composite genetic and physical maps with the genomic sequence.
Links from GBrowse features (BACs, markers) to locations in the SoyBase genetic and physical maps are available from a contextual menu.
The preliminary 7x assembly is still available
here.
View or download a list of markers or other sequence map features by chromosomes here.
Download gene call sequences from the Williams 82 genomic sequence.
Search for Sequence Features and Annotations
Genetic and Sequence Maps Comparison
This tool allows a comparison of the genetic and sequence maps. After choosing a linkage group/chromosome you will
see two panes in a CMap display. The left pane shows the genetic markers using the order and spacing from the
Williams 82 version 1.01 genome assembly. The right pane shows the same markers as
shown in the Consensus 3.0 genetic map.
Choose a Linkage Group
BARCSOYSSR Potential SSR Database
BARCSOYSSR 1.0, a collection of 33,065 potential SSRs identified by Qijian Song
and Perry Cregan from the Wm82 genomic sequence has been released. These SSRs are
now available as a track in the
SoyBase Genome Browser. The whole dataset is available
for download from the link below.
BARC Soybean Potential SSR Data
Soybean Classic SSR and RFLP Marker Sequences
JGI Phytozome portal
JGI Phytozome soybean browser
PlantGDB soybean browser
