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SoyBase and the Soybean Breeder's Toolbox
Integrating Genetics and Molecular Biology for Soybean Researchers


Welcome to the SoyBase Soybean EST Search Page



Last Database Update October 2010

This page provides querying tools for the soybean EST collection. When there is a choice of output formats, choosing HTML will return the data formatted for display in your browser while TEXT returns the data in a tab-delimited form that can be copied to the clipboard or saved to your computer.

Perform a text search of the The NCBI Public EST Library annotations

This search will return a list of the EST Libraries whose annotation matches the search term(s).
Examples of valid search strings are:
      - young AND cotyledon
      - leaf OR meristem
      - leaf AND meristem BUTNOT flower
      - leaf AND (meristem OR flower)

Search text:

Select output format

Choosing HTML output will show a page of the EST libraries that contain the words submitted in their description. Records found contain hyperlinks to the Genbank records for each sequence of the library selected. To generate a page of tab-delimited results ready for saving to your computer choose the TEXT option.

    HTML     TEXT

Perform a text search of the EST annotations

This search will return a list of the ESTs whose annotation matches the search term(s).

Search text:

Select output format

Choosing HTML output will show a page of the ESTs found with hyperlinks to their Genbank records. The TEXT option will return a page of tab-delimited results suitable for importing into a spreadsheet program such as Excel. In either case the browser's Save command (Mac: Save As... or Cmd-S, Windows: Save As... or cntl-S) will save the results to a file on your computer. Once saved the GenBank identifiers can be extracted and saved as a text file which then can be used to retrieve the sequences using NCBI's Eutils or Batch Entrez.

    HTML     TEXT

Comments and suggestions to: the SoyBase Curator

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